PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G240700.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 397aa    MW: 42109 Da    PI: 7.4618
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G240700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.4e-0733661755
                   AP2 17 AeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +++rd      + k+++lg f+ta  Aa+a+++a+ k++g
  Sobic.006G240700.3.p 33 VQCRD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 66
                          78999......55************************997 PP

2AP245.32.1e-14109159155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Sobic.006G240700.3.p 109 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 159
                           79********.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.995174IPR001471AP2/ERF domain
SMARTSM003803.2E-113480IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-93875IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-113974IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-18109169IPR016177DNA-binding domain
CDDcd000181.09E-26109169No hitNo description
PfamPF008472.5E-10109159IPR001471AP2/ERF domain
PROSITE profilePS5103216.067110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-17110167IPR001471AP2/ERF domain
SMARTSM003803.3E-33110173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MPSLSLFLCV PLSLSYSYLS AVSHSPCSLL VLVQCRDCGK QVYLGGFDTA HAAARAYDRA  60
AIKFRGVEAD INFSLEDYQD DMKQMGHLSK EEFVHVLRRQ STGFPRGSSK FRGVTLHKCG  120
RWEARMGQFL GKKYVYLGLF DTEEEAARAY DRAAIKCNGK DAVTNFDPSI YAEELEPAAS  180
TGGGSGGGDD EHNLDLSLGS SAGNKRGSLD GGGGGDDETS DQRVPMAFDI DWQTAAPRST  240
KAKQACHVST TGWQLDASSK QPQMLPPPLP PPPALQVAHH LPLPFSPRHP QFLSNGDPGT  300
AGGLSLAIGG AGGGGGGGHW TPQLQHQQQH HQQRLHGGVW ANGGGTSWPP PPHPPPPTTA  360
ATAAAASSRF PPYVVTTQGP AGWVQKNGFH SLARPT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626960.0BT062696.1 Zea mays full-length cDNA clone ZM_BFb0334I17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447220.11e-174hypothetical protein SORBIDRAFT_06g030670
TrEMBLC5Y9281e-174C5Y928_SORBI; Putative uncharacterized protein Sb06g030670
STRINGSb06g030670.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.29e-76AP2 family protein